List of Publications#
The application of the open pharmacological concepts triple store (Open PHACTS) to support drug discovery research (, )
Identifying sigma factors in Mycobacterium smegmatis by comparative genomic analysis (, )
The public road to high-quality curated biological pathways (, )
Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes (, )
Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes (, )
Wikidata: A platform for data integration and dissemination for the life sciences and beyond (, )
Scientific Lenses to Support Multiple Views over Linked Chemistry Data (, )
Wikidata as a semantic framework for the Gene Wiki initiative (, )
WikiPathways: capturing the full diversity of pathway knowledge (, )
Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources (, )
Applying linked data approaches to pharmacology: Architectural decisions and implementation (, )
Pathway enrichment based on text mining and its validation on carotenoid and vitamin A metabolism (, )
The FAIR Guiding Principles for scientific data management and stewardship (, )
Nature Europe site should highlight most productive countries. (, )
Opportunities and challenges presented by Wikidata in the context of biocuration (, )
WikiGenomes: an open Web application for community consumption and curation of gene annotation data in Wikidata (, )
WikiGenomes: an open Web application for community consumption and curation of gene annotation data in Wikidata (, )
The distinction between linguistic and conceptual semantics in medical terminology and its implication for NLP-based knowledge acquisition. (, )
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research (, )
Using Shape Expressions (ShEx) to Share RDF Data Models and to Guide Curation with Rigorous Validation (, )
Measuring impact in online resources with the CInumber (the CitedIn Number for online impact) (, )
Acknowledging contributions to online expert assistance (, )
Acknowledging contributions to online expert assistance (, )
Explicit interaction information from WikiPathways in RDF facilitates drug discovery in the Open PHACTS Discovery Platform (, )
Wikidata as an intuitive resource towards semantic data modeling in data FAIRification (, )
Addendum: The FAIR Guiding Principles for scientific data management and stewardship (, )
Using Shape Expressions (ShEx) to Share RDF Data Models and to Guide Curation with Rigorous Validation (, )
FAIR Principles: Interpretations and Implementation Considerations (, )
A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses (, )
Participative Decision Making and the Sharing of Benefits: Laws, ethics, and data protection for building extended global communities (, )
Ten simple rules for creating reusable pathway models for computational analysis and visualization (, )
Understanding signaling and metabolic paths using semantified and harmonized information about biological interactions (, )
Using Crowd-sourcing Platforms to Increase and Spread Knowledge on the Biodiversity in Sub-Saharan Africa (, )
Fairmetrics/Metrics: Proposed Fair Metrics And Results Of The Metrics Evaluation Questionnaire (, )